I'm pretty sure that extra outlet is nothing to worry about, that's there so when the shaft seal fails & the water gets into the bearing it can escape out there, & it looks like they've just made it so a hose can be attached to route the water away.
The 4AGE water pump has the same thing, only it doesn't have the fitting, just a hole in the housing in the same location. I don't know why they'd put a hose on it, as when you see water come out there it means you need a new water pump.
Dunno what the deal is with the thermostat, where was that loose bit attached?
When you change the water pump surely you'd replace the thermostat at the same time anyway?
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