If your fuel pressure regulator is working correctly (and sized correctly to flow the required return fuel) then your fuel rail pressure shouldn't change from factory and your economy shouldn't be effected.
You will be heating the fuel as it goes from the pump to the rail -> FPR -> tank in a big loop, but other than that...
At the same time if you only need the fuel supply that one pump can provide (currently) it should be pretty easy for you to disconnect power to one of your pumps
Cheers
Wilbo
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