On a motor that's had its bearing caps rearranged you should think about having the rods resized and the main caps done while your at it. It'll cost money, but an oblong shaped bearing tends to lead to spun bearings, just as if your factory rod bolts have stretched while the revs are too high.
They'll machine off a small amount of material from the mating surface of each bearing cap and then rebore a perfect circle for the bearing while the end cap is bolted in place to torque specification.
I've heard of standard size ACL bearings not working in the place of standard size Toyota bearings in the past, as they run different tolerances, what breed of bearing are you running?
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