Wont be the ECU it will crank regardless if the ECU is there or not ...
I'm thinking battery power is low or bad earths to the block or both ..
Before you do to much are the battery leads getting hot ? Is the starter motor the same one that came with the motor & trans you are putting in ( as in make sure its not binding, jaming on something on the ring gear or bell housing etc, if nothings been changed then just hook up jummper leads as mentioned below..
Hook up jumper leads connected to a car or good battery & run the positive to the battery positive & the negative jumper lead to the engine block & try that ..
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