Are you sure that the IGN output should be wired that way? If that's what Haltech says should be done, that obviously fine. But most ECU's don't actually know what cylinder is what and just cycle thru the ignition and injector outputs. Certainly with Adaptronic computers its:
IGN 1 to CYL 1
IGN 2 to CYL 3
IGN 3 to CYL 4
IGN 4 to CYL 2
Again, double check with the manual or Haltech directly.
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