I think what's needed or not depends on user preference and also the standalone itself, i.e whether it has the ability to work with said parts..
For example, i control my 4A-GTE with Megasquirt 1 and i see no use for the cold start injector located on the intake plenum.. I end up replacing it with IAT sensor since it think that's the best spot to monitor air temperature.
Another example is the stepper motor idle valve.. MS1 don't have the ability to control it so obviously it's no longer needed.
I'm not sure if i helped answer your question? It's very broad IMHO.
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