Injector 12v! Check it out Steve. I think it would be simular to the AE86. Usually the ecu will power it for start up then ignition will take over. Even though the ignition will be on at ON and START.
Had this problem with a friend's 4AGE and we gave IGN power to the Injector 12v and all was good.
Only thing I can think of though, was it fine before with the old engine before everything was swapped ? Also if its like a Gen 1, it might have one of those old diagnostic pods hanging from the loom just before it goes into the cabin. Check for those and see if there is any fuses, there might be an injector fuse.
Not to sure if this will all work for the 1G but, sounds like injector power.
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