Patrick, is the upper u joint binding when steering? If not then it's still within its operating range. You'll find that they can get some pretty good angle on them before it starts to be a problem.
I'm using the AE86 R&P in my RA28 with 1UZ and yes the shaft is on much more of an angle than with the steering box but have no issues with its performance. I think you'll be fine.
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