this might be a thought matty to try, but have you got the right sensor setup selected for the vacuum?
sorry i dont really know much about the EVC, but like im just thinking about the only place ive ever seen negative numbers come up was before on my S-AFC when i selected the wrong type of pressure sensor display. i.e. It was looking for a MAP reading when there was none, thus giving a negative result and yet it was taking the Karmann reading fine.. a 1JZ being a MAP engine, maybe its something similar?
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