There is no valve clearance with hydraulic lifters. The lifters have a spring inside them that compresses when you tighten down the rockers and then the space inside the lifter fills with oil.
Did the new head come with rocker arms too or did you use the old ones from the old head. If you used the old rockers they can sometimes rattle if they have a bit of wear on the end that touches the valve. You might have a sticky lifter causing the noise too.
The 3Y and 4Y head have the same combustion chamber shape but the 3Y has 86mm bore and 4Y has 91mm bore.
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