curiously, have you marked the belt, and the 3 cogs or are you performing this operation slightly differently?
the reason i ask because once you mark the belt and cogs, then replicate it for the new belt, everything 'should' go back the same as it came off.
so it wouldn't really matter if either the cams were slightly off or the crank was off as your reference points are now the marks on the belt, not whether everything is at TDC.
IF something was out of alignment before you performed this, it will remain the same afterwards as well (ie. will still be out of alignment), but you would check that at the end once the new belt is on and tensioned and you rotate the crank 720 degees to see if everything DOES go back to 12 o clock.
just my thought.
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